The following list presents an overview of the most common notable programs listed alphabetically with indication of the corresponding year of publication involved organisation or institution short description availability of a webservice and the license. In proteoglycans pgs they are attached to a core protein. Haddock is an integrative platform for the modeling of biomolecular complexes.
The number of protein ligand docking programs currently available is high and has been steadily increasing over the last decades.

Haddock2 2 predict 3d dna.
It supports a large variety of input data and can deal multi component assembles of proteins peptide small molecules and nucleic acids.
viral dna binding to nlrc3 an
integrated protein protein docking
europe pmc
europe pmc
integrative modelling of biomolecular
haddock web server
sequence co evolution gives 3d contacts
analysis of indian sars cov 2 genomes
researchgate
europe pmc
molecular dynamics simulation
docking sampling of conformational
protein complexes
molecular characterization of rnase iii
haddock web server
researchgate
haddock web server
molecular dynamics simulation
nmr data processing from signal to 3d
sciencedirect com
macromolecular modeling and design in
https www jbc org article s0021 9258 21 00533 0 fulltext
dna aptamers
molecular dynamics simulation
docking sampling of conformational
protein complexes
the haddock web server for data driven
sars cov2 with sars cov1 and mers cov
rna protein complexes
the haddock2 2 web server user
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